Honeymoon - 3 weeks in Scotland - What to do?

[Nomad]

I would put Skye and the areas around the Kyle of Localsh on my list.

If staying in Skye I can recommend this B&B, great location, fantastic host and stunning views from your bedroom (the website does not do the accommodation justice it is very nice).

Car needed, take your time as some of the roads and people (mainly tourists) driving on them are challenging.

Take insect repellent the midges will be out in force by July (which is why I visited beginning of June this year)

Enjoy yourself

The wife and I (32 and 33 years old) are starting to plan our honeymoon in Scotland. We'll be there for three weeks during the summer (starting mid-July).

Since it's our first time and time is limited, I need your advice on what to do and why.

Things and places we'd like to see:
. Culture
. Whisky (a couple distillery tours just have to be on our list)
. Landscapes
. Inverness
. Edinburgh
. Glasgow

We'll be travelling around by rental car and/or public transport to soak up as much as possible. Therefore:

What would you do?
Where would you stay? (From B&B in no man's land to luxury hotel, we're up for it)
How would you get around?

Thanks for helping us making this trip something special!