I'm retired from the USN..but when I came in over 30 yrs ago Navy Regs provided for sailors to have direct communication with the commanding officer. A sailor may request to see the CO. His request will go up the chain of command and he may or may not disclose why he wants to see the CO. In my experience, when a sailor has a problem and has requested this, when he has disclosed why he needs to talk to the CO, the problem was resolved at a lower level.
Even though it's been over 10 years, the Navy is still "feeling the pain" from Tailhook. Any incidents of discrimination, or harassment whether it is sexual, racial, religious or cultural is dealt with swiftly.